Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_02692COG3435 Gentisate 1,2-dioxygenase. (359 aa)    
Predicted Functional Partners:
C481_02697
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
   
 0.621
C481_02687
Hypothetical protein.
       0.570
C481_03647
Asp/Glu/hydantoin racemase; COG3473 Maleate cis-trans isomerase.
 
     0.497
C481_02672
FAD-binding monooxygenase protein; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
     0.496
C481_01792
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
  
 0.493
C481_01867
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
  
 0.478
C481_00830
5-dehydro-4-deoxyglucarate dehydratase; COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
  
 0.473
C481_02682
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
    
 0.469
C481_04998
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
  
 0.461
C481_02762
Hypothetical protein.
  
     0.448
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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