STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_03022COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold. (354 aa)    
Predicted Functional Partners:
C481_03027
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
    0.954
C481_03017
Alcohol dehydrogenase GroES domain protein; COG1064 Zn-dependent alcohol dehydrogenases.
 
   
 0.810
C481_18535
Choline monooxygenase; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
  
  0.544
C481_21236
Cupin; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
    
  0.493
C481_01737
Putative LmbE-like protein; COG2120 Uncharacterized proteins, LmbE homologs.
    
  0.465
C481_03037
COG1846 Transcriptional regulators.
 
     0.457
C481_18340
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
  
  
 0.413
C481_18505
Dimethylglycine dehydrogenase; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
 
  0.409
C481_07506
COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
  
     0.408
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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