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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_03072TrkA-C domain-containing protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (527 aa)    
Predicted Functional Partners:
C481_07336
TrkA-N domain-containing protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
 
     0.723
C481_15750
TrkA-N domain-containing protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
 
     0.709
C481_12049
COG0688 Phosphatidylserine decarboxylase.
  
  
  0.556
C481_15145
Phosphoesterase RecJ domain-containing protein; COG0618 Exopolyphosphatase-related proteins.
  
     0.476
C481_14388
Phospholipase-like protein; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
     
 0.475
C481_10995
TrkA-N domain-containing protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
     0.469
C481_16977
NAD(P)H dehydrogenase (quinone); COG2249 Putative NADPH-quinone reductase (modulator of drug activity B).
   
 
 0.460
C481_08121
Phosphoesterase RecJ domain-containing protein; COG0618 Exopolyphosphatase-related proteins.
  
     0.459
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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