STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_03217Hypothetical protein; COG1266 Predicted metal-dependent membrane protease. (213 aa)    
Predicted Functional Partners:
C481_08466
Hypothetical protein.
 
  
 0.793
C481_15435
COG3413 Predicted DNA binding protein.
  
     0.691
C481_20106
Hypothetical protein; COG0730 Predicted permeases.
  
     0.617
C481_06532
Bacterio-opsin activator HTH domain protein; COG3413 Predicted DNA binding protein.
  
     0.584
C481_07141
COG0778 Nitroreductase.
 
  
 0.532
C481_03222
Haloacid dehalogenase; COG1011 Predicted hydrolase (HAD superfamily).
       0.518
C481_01110
Nuclease-like protein; COG1525 Micrococcal nuclease (thermonuclease) homologs.
  
     0.496
C481_15740
N-acetyltransferase GCN5; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.492
C481_02527
HTH DNA-binding protein; COG3413 Predicted DNA binding protein.
  
     0.470
C481_15425
COG0842 ABC-type multidrug transport system, permease component.
  
    0.463
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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