STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_03472Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases. (246 aa)    
Predicted Functional Partners:
C481_12154
NADH-ubiquinone oxidoreductase chain 49kDa; COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.826
C481_14838
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.826
C481_06562
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
  
  0.632
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.587
C481_18590
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.587
C481_05115
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
  
  
  0.577
rps17p
30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
  0.558
C481_07591
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
  
     0.551
C481_20216
Methyltransferase type 11; COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
  
  
  0.545
rps24e
COG2004 Ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
  0.536
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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