STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
C481_03472Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases. (246 aa)    
Predicted Functional Partners:
C481_12154
NADH-ubiquinone oxidoreductase chain 49kDa; COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.925
C481_14838
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
   
 0.925
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 0.612
C481_18590
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.587
C481_06562
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.573
C481_12149
COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; Belongs to the complex I 20 kDa subunit family.
    
  0.554
C481_07591
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
  
     0.551
C481_04441
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.515
C481_16972
2-heptaprenyl-1,4-naphthoquinone methyltransferase; COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
  
     0.492
C481_13229
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
  0.491
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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