Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_04456Hypothetical protein; COG2512 Uncharacterized membrane-associated protein/domain. (370 aa)    
Predicted Functional Partners:
C481_06836
COG1711 Uncharacterized protein conserved in archaea.
  
     0.732
C481_14893
Exosortase EpsH-like protein; COG4083 Predicted membrane protein.
  
     0.702
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.687
rpl39e
COG2167 Ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.679
C481_08611
COG1967 Predicted membrane protein.
  
     0.671
C481_15560
PRC-barrel domain-containing protein.
  
     0.651
C481_09487
COG1422 Predicted membrane protein.
  
     0.643
endA
tRNA splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
  
     0.624
C481_06067
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.608
C481_18635
COG0681 Signal peptidase I.
  
     0.605
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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