Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_04466Radical SAM protein; COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme. (331 aa)    
Predicted Functional Partners:
C481_04471
COG2237 Predicted membrane protein.
 
     0.924
C481_09128
COG1709 Predicted transcriptional regulator.
  
     0.700
C481_15110
COG2237 Predicted membrane protein.
 
     0.692
C481_04021
Peptidase M50; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
     0.677
C481_15355
tRNA-guanine transglycosylase; COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain.
  
     0.651
C481_17422
Zinc finger protein; COG1326 Uncharacterized archaeal Zn-finger protein.
  
     0.635
C481_17900
NMD3 family protein; COG1499 NMD protein affecting ribosome stability and mRNA decay.
  
     0.632
carS
Hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.615
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.611
C481_16437
Radical SAM protein; COG1031 Uncharacterized Fe-S oxidoreductase.
  
     0.611
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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