STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_04496COG2086 Electron transfer flavoprotein, beta subunit. (263 aa)    
Predicted Functional Partners:
C481_04491
COG2025 Electron transfer flavoprotein, alpha subunit.
 0.999
C481_12164
COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
 
 0.926
C481_12834
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.893
C481_13479
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.890
C481_16045
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.888
C481_05505
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.887
C481_20681
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.887
C481_17532
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.881
C481_19040
4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
   
 0.878
C481_06507
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.876
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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