STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_04651COG0477 Permeases of the major facilitator superfamily. (463 aa)    
Predicted Functional Partners:
C481_04646
Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.
       0.554
C481_04736
Hypothetical protein; COG3631 Ketosteroid isomerase-related protein.
  
     0.543
C481_13689
COG1454 Alcohol dehydrogenase, class IV.
  
    0.517
C481_06067
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.490
C481_19415
Glutamate/valine-rich protein.
  
     0.443
C481_06362
Adenosylcobinamide amidohydrolase.
  
     0.441
C481_11395
Hypothetical protein.
  
     0.423
C481_02972
SpoVT/AbrB domain protein; COG0704 Phosphate uptake regulator.
  
     0.413
C481_12779
N-acetyltransferase GCN5; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.409
C481_12849
Cupin 2 conserved barrel domain protein; COG0662 Mannose-6-phosphate isomerase.
  
     0.408
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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