STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eCOG1552 Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)    
Predicted Functional Partners:
rps24e
COG2004 Ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.999
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA.
  
 0.999
C481_14234
COG1997 Ribosomal protein L37AE/L43A.
  
 0.999
rpl31e
COG2097 Ribosomal protein L31E; Belongs to the ribosomal protein L31e family.
  
 0.999
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.998
rps6e
COG2125 Ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.998
rpl15e
COG1632 Ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 0.998
rpl24e
50S ribosomal protein L24E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family.
  
 0.998
rpl18e
COG1727 Ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family.
 
 0.998
rpl21e
COG2139 Ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.998
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.