STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_04736Hypothetical protein; COG3631 Ketosteroid isomerase-related protein. (125 aa)    
Predicted Functional Partners:
C481_15055
Phenazine biosynthesis protein PhzF family protein; COG0384 Predicted epimerase, PhzC/PhzF homolog.
  
 
 0.652
C481_02527
HTH DNA-binding protein; COG3413 Predicted DNA binding protein.
  
     0.550
C481_04651
COG0477 Permeases of the major facilitator superfamily.
  
     0.543
hisH
Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.537
C481_19540
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin.
  
     0.519
C481_19305
COG0078 Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
   0.504
C481_20156
Hypothetical protein.
  
     0.420
C481_12779
N-acetyltransferase GCN5; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.416
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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