STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_04953Beta-lactamase; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I. (274 aa)    
Predicted Functional Partners:
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
    
 0.773
C481_04943
COG0464 ATPases of the AAA+ class.
 
     0.651
C481_04948
Hypothetical protein.
       0.606
C481_04958
Circadian clock protein KaiC; COG0467 RecA-superfamily ATPases implicated in signal transduction.
       0.500
C481_07656
Hypothetical protein; COG4801 Predicted acyltransferase.
  
     0.499
C481_04021
Peptidase M50; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
     0.494
phnC
Phosphate/phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
  
  
 0.469
C481_06906
COG4749 Uncharacterized protein conserved in archaea.
  
     0.465
C481_07871
COG1885 Uncharacterized protein conserved in archaea.
  
     0.452
C481_15355
tRNA-guanine transglycosylase; COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain.
 
    0.448
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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