Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C481_05415COG2314 Predicted membrane protein. (144 aa)    
Predicted Functional Partners:
C481_05410
COG3815 Predicted membrane protein.
       0.684
rps9p
COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
    0.559
C481_12154
NADH-ubiquinone oxidoreductase chain 49kDa; COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
       0.445
C481_14838
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
       0.445
C481_15905
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
    0.431
C481_10480
Hypothetical protein.
 
    0.428
C481_10485
Hypothetical protein.
 
    0.427
C481_05420
Malate dehydrogenase (acceptor); COG0579 Predicted dehydrogenase.
       0.421
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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