STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_05830Beta-lactamase; COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily). (370 aa)    
Predicted Functional Partners:
C481_05835
Hypothetical protein; COG0178 Excinuclease ATPase subunit.
       0.811
C481_02087
Peptidase S8 and S53 subtilisin kexin sedolisin; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
 
     0.545
C481_07196
biotin--acetyl-CoA-carboxylase ligase; COG1654 Biotin operon repressor.
 
   
 0.541
C481_05840
Isoleucine cluster protein; COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
 
     0.520
C481_05825
OsmC family protein; COG1765 Predicted redox protein, regulator of disulfide bond formation.
       0.473
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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