STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_05970Ferritin; COG2406 Protein distantly related to bacterial ferritins. (151 aa)    
Predicted Functional Partners:
C481_05350
Hypothetical protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
  
     0.665
C481_05975
Hypothetical protein.
       0.633
C481_16882
Cupin; COG0662 Mannose-6-phosphate isomerase.
  
     0.532
C481_13539
COG3428 Predicted membrane protein.
  
     0.524
C481_05980
Hypothetical protein.
       0.465
C481_13544
COG3428 Predicted membrane protein.
  
     0.447
C481_17227
COG0095 Lipoate-protein ligase A.
  
     0.427
C481_06232
COG2020 Putative protein-S-isoprenylcysteine methyltransferase.
   
    0.408
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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