STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_06232COG2020 Putative protein-S-isoprenylcysteine methyltransferase. (204 aa)    
Predicted Functional Partners:
C481_18620
COG1100 GTPase SAR1 and related small G proteins.
    
 0.851
C481_09108
Peptidase.
    
 0.841
C481_01907
6-phosphogluconolactonase; COG2706 3-carboxymuconate cyclase.
 
  
  0.771
C481_09023
Type I phosphodiesterase/nucleotide pyrophosphatase; COG1524 Uncharacterized proteins of the AP superfamily.
 
  
  0.769
C481_19745
HAD-superfamily hydrolase, subfamily IA, variant 3; COG0637 Predicted phosphatase/phosphohexomutase.
  
  
  0.753
C481_17772
Metallophosphoesterase; COG1409 Predicted phosphohydrolases.
    
  0.728
rps13p
30S ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
  
    0.640
C481_06347
COG2897 Rhodanese-related sulfurtransferase.
    
  0.565
C481_18135
COG2897 Rhodanese-related sulfurtransferase.
    
  0.565
C481_18140
COG2897 Rhodanese-related sulfurtransferase.
    
  0.565
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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