Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpl21eCOG2139 Ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. (102 aa)    
Predicted Functional Partners:
rpl40e
COG1552 Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.998
rpl15e
COG1632 Ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 0.998
rpl24e
50S ribosomal protein L24E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family.
   
 0.998
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.998
rpl18e
COG1727 Ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.998
rpl30p
COG1841 Ribosomal protein L30/L7E.
  
 0.998
rpl32e
50S ribosomal protein L32e; COG0468 RecA/RadA recombinase; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 0.998
rpl3p
50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 0.998
rplP0
Acidic ribosomal protein P0; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 0.998
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA.
  
 0.998
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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