Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_07111Mechanosensitive ion channel protein MscS; COG0668 Small-conductance mechanosensitive channel. (397 aa)    
Predicted Functional Partners:
C481_07116
Methyltransferase; COG2890 Methylase of polypeptide chain release factors.
       0.902
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
       0.772
C481_07126
COG0620 Methionine synthase II (cobalamin-independent).
       0.708
C481_17900
NMD3 family protein; COG1499 NMD protein affecting ribosome stability and mRNA decay.
   
    0.650
C481_07096
COG1491 Predicted RNA-binding protein.
 
     0.589
C481_01510
TrkA-N domain protein; COG0025 NhaP-type Na+/H+ and K+/H+ antiporters.
 
   
 0.528
metE
Methionine synthase; Catalyzes the transfer of a methyl group to L-homocysteine resulting in methionine formation. The physiological methyl donor is unknown.
       0.510
C481_07121
Pyrrolo-quinoline quinone.
       0.450
rpl21e
COG2139 Ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
 
     0.402
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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