STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_07186Amidohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases. (348 aa)    
Predicted Functional Partners:
C481_07181
Metal dependent phosphohydrolase; COG1078 HD superfamily phosphohydrolases.
 
     0.697
C481_12744
N-ethylammeline chlorohydrolase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
     0.687
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 
 0.639
C481_07191
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.635
C481_11265
COG0167 Dihydroorotate dehydrogenase.
  
 
 0.612
C481_19040
4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 
  0.612
C481_15015
Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
    
 0.598
hutI
COG1228 Imidazolonepropionase and related amidohydrolases; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
    
 0.593
C481_04331
COG1957 Inosine-uridine nucleoside N-ribohydrolase.
    
 0.570
C481_18835
Hypothetical protein; COG1611 Predicted Rossmann fold nucleotide-binding protein.
    
  0.532
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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