STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_07331Helicase; COG1112 Superfamily I DNA and RNA helicases and helicase subunits. (957 aa)    
Predicted Functional Partners:
rpoD
DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
  
 
 
 0.536
C481_14309
Metallophosphoesterase; COG0420 DNA repair exonuclease.
  
   0.498
C481_12274
Flap endonuclease-1; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
  
 
 
 0.491
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.479
C481_04968
COG0557 Exoribonuclease R.
  
 
 
 0.476
C481_07326
Hypothetical protein.
       0.471
C481_04526
UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases.
  
 
   0.470
C481_07321
Hypothetical protein.
       0.469
C481_19851
Hypothetical protein; COG0420 DNA repair exonuclease.
  
   0.434
C481_14343
COG0417 DNA polymerase elongation subunit (family B).
  
   0.403
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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