STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_07366COG3173 Predicted aminoglycoside phosphotransferase. (353 aa)    
Predicted Functional Partners:
C481_11455
COG1960 Acyl-CoA dehydrogenases.
 0.973
C481_05505
COG1960 Acyl-CoA dehydrogenases.
 
 0.927
C481_13479
COG1960 Acyl-CoA dehydrogenases.
 
 0.797
C481_17990
COG1960 Acyl-CoA dehydrogenases.
 
 0.577
C481_17482
2-alkenal reductase; COG2130 Putative NADP-dependent oxidoreductases.
 
    0.569
C481_16045
COG1960 Acyl-CoA dehydrogenases.
 
 0.555
C481_02817
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
   0.554
C481_07371
COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
  0.530
C481_07356
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
   0.478
C481_07361
COG1011 Predicted hydrolase (HAD superfamily).
       0.477
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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