STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_07426Phenylacetic acid degradation B; COG3460 Uncharacterized enzyme of phenylacetate metabolism. (105 aa)    
Predicted Functional Partners:
paaA
phenylacetate-CoA oxygenase subunit PaaA.
 
  
  0.985
C481_07431
phenylacetate-CoA oxygenase subunit PaaI.
 
  
  0.985
C481_07411
Thioesterase superfamily protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
  0.935
C481_07441
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
     0.844
C481_07446
phenylacetate-CoA ligase; COG1541 Coenzyme F390 synthetase.
 
  
  0.833
C481_07436
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
     0.812
C481_07451
Thioesterase superfamily protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
  0.718
C481_07386
phenylacetate--CoA ligase; COG1541 Coenzyme F390 synthetase.
  
  
  0.696
C481_07416
Bacterio-opsin activator HTH domain-containing protein; COG3413 Predicted DNA binding protein.
       0.569
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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