STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_07646Polyketide cyclase/dehydrase; COG5637 Predicted integral membrane protein. (277 aa)    
Predicted Functional Partners:
C481_07641
Zinc-binding dehydrogenase oxidoreductase; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
     0.921
C481_14249
COG4329 Predicted membrane protein.
  
     0.580
C481_10705
PAS/PAC sensor protein; COG2202 FOG: PAS/PAC domain.
  
     0.558
C481_10142
Catalase; COG3546 Mn-containing catalase.
  
     0.528
C481_03727
Hypothetical protein; COG1145 Ferredoxin.
  
     0.518
C481_20116
COG4329 Predicted membrane protein.
  
     0.518
C481_15860
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.486
C481_07676
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
     0.475
C481_00380
Hypothetical protein.
  
     0.434
C481_21036
CRISPR-associated helicase, Cyano-type; COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
  
     0.430
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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