STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_08006Phosphoesterase RecJ domain-containing protein; COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain. (639 aa)    
Predicted Functional Partners:
C481_12309
COG1745 Predicted metal-binding protein.
  
   
 0.747
C481_08021
Dihydropyrimidine dehydrogenase; COG0042 tRNA-dihydrouridine synthase.
  
    0.745
C481_03967
Hypothetical protein; COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain.
  
     0.730
cofC
2-phospho-L-lactate guanylyltransferase CofC; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
  
     0.715
C481_11919
COG1885 Uncharacterized protein conserved in archaea; Belongs to the UPF0212 family.
  
     0.698
C481_09417
COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains.
  
     0.694
C481_07871
COG1885 Uncharacterized protein conserved in archaea.
  
     0.693
C481_13979
Regulatory protein Crp; COG1497 Predicted transcriptional regulator.
  
     0.693
C481_17572
DEAD/DEAH box helicase; COG1202 Superfamily II helicase, archaea-specific.
  
    0.691
C481_17122
COG1202 Superfamily II helicase, archaea-specific.
  
     0.681
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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