STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_08031COG0656 Aldo/keto reductases, related to diketogulonate reductase. (267 aa)    
Predicted Functional Partners:
C481_04576
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
 0.633
C481_13439
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
0.577
C481_11939
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
0.565
C481_08021
Dihydropyrimidine dehydrogenase; COG0042 tRNA-dihydrouridine synthase.
       0.535
cofD
LPPG:FO 2-phospho-L-lactate transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.
       0.535
C481_08036
Hypothetical protein.
       0.532
C481_15860
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.510
C481_11969
Serine protein kinase, PrkA; COG2766 Putative Ser protein kinase.
   
    0.508
C481_11974
COG2766 Putative Ser protein kinase.
   
    0.508
C481_17482
2-alkenal reductase; COG2130 Putative NADP-dependent oxidoreductases.
   
 
 0.499
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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