STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_08036Hypothetical protein. (543 aa)    
Predicted Functional Partners:
lig
DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
     0.652
C481_08031
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
       0.532
C481_05645
Hypothetical protein.
  
     0.493
C481_08571
COG2988 Succinylglutamate desuccinylase.
  
     0.486
C481_13614
Bacterio-opsin activator HTH domain protein; COG3413 Predicted DNA binding protein.
  
     0.480
C481_05370
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.472
C481_06172
ArsR family transcriptional regulator; COG3398 Uncharacterized protein conserved in archaea.
  
     0.441
C481_08021
Dihydropyrimidine dehydrogenase; COG0042 tRNA-dihydrouridine synthase.
       0.436
cofD
LPPG:FO 2-phospho-L-lactate transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.
       0.436
C481_12704
Type II secretion system protein F; COG2064 Flp pilus assembly protein TadC.
  
     0.432
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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