STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_08081XRE family transcriptional regulator; COG1813 Predicted transcription factor, homolog of eukaryotic MBF1. (98 aa)    
Predicted Functional Partners:
rpl18e
COG1727 Ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family.
  
   0.917
rpl29
COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.914
rpl21e
COG2139 Ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.909
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA.
  
   0.906
rpl31e
COG2097 Ribosomal protein L31E; Belongs to the ribosomal protein L31e family.
  
   0.904
rpl30p
COG1841 Ribosomal protein L30/L7E.
  
 
 
 0.900
rps24e
COG2004 Ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
   0.895
rps17E
COG1383 Ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.894
rps28e
COG2053 Ribosomal protein S28E/S33; Belongs to the eukaryotic ribosomal protein eS28 family.
  
   0.885
rpl40e
COG1552 Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
  
   0.884
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.