STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_08511Hypothetical protein. (183 aa)    
Predicted Functional Partners:
C481_08516
COG0144 tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.931
C481_08521
Hypothetical protein; COG1938 Archaeal enzymes of ATP-grasp superfamily.
 
     0.733
C481_16517
COG0350 Methylated DNA-protein cysteine methyltransferase.
  
     0.658
C481_16607
MarR family transcriptional regulator; COG3398 Uncharacterized protein conserved in archaea.
  
     0.657
C481_18950
Nitrogen-fixing NifU domain-containing protein; COG0694 Thioredoxin-like proteins and domains.
  
     0.643
C481_04908
COG2404 Predicted phosphohydrolase (DHH superfamily).
  
     0.633
C481_17920
Helicase c2; COG1199 Rad3-related DNA helicases.
  
     0.607
rnp2
Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
     0.595
C481_07941
Hypothetical protein; COG1573 Uracil-DNA glycosylase.
  
     0.588
C481_16452
Hypothetical protein; COG0727 Predicted Fe-S-cluster oxidoreductase.
  
     0.588
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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