Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C481_08616Hypothetical protein. (235 aa)    
Predicted Functional Partners:
C481_08621
Hypothetical protein.
       0.893
C481_08466
Hypothetical protein.
  
  
 0.658
C481_08648
Hypothetical protein.
       0.524
C481_08626
Thiamine pyrophosphate domain-containing TPP-binding protein; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].
       0.519
cysS
COG0215 Cysteinyl-tRNA synthetase.
  
    0.469
C481_11230
COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2.
       0.462
C481_07141
COG0778 Nitroreductase.
  
    0.427
C481_19620
Nitroreductase family protein; COG0778 Nitroreductase.
  
    0.427
C481_14893
Exosortase EpsH-like protein; COG4083 Predicted membrane protein.
   
    0.419
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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