Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_08718Rhomboid family protein; COG3582 Predicted nucleic acid binding protein containing the AN1-type Zn-finger. (303 aa)    
Predicted Functional Partners:
C481_12719
Twin-arginine translocation protein, TatA/E family subunit; COG1826 Sec-independent protein secretion pathway components.
  
 
 0.819
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
 
     0.793
C481_04021
Peptidase M50; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
  
 0.744
C481_08471
Hypothetical protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
   
 0.713
C481_16612
Hypothetical protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
   
 0.713
C481_08728
PHP domain-containing protein; COG1796 DNA polymerase IV (family X).
 
    0.665
C481_15595
COG0212 5-formyltetrahydrofolate cyclo-ligase.
  
  
 0.658
C481_08723
Hypothetical protein.
       0.556
C481_08733
Hypothetical protein.
       0.513
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.446
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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