STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_09043Blue (type 1) copper domain-containing protein; COG2133 Glucose/sorbosone dehydrogenases. (772 aa)    
Predicted Functional Partners:
C481_01065
Binding-protein-dependent transport systems inner membrane component; COG0555 ABC-type sulfate transport system, permease component.
  
 
 0.794
C481_06592
Binding-protein-dependent transport system inner membrane protein; COG1178 ABC-type Fe3+ transport system, permease component.
  
 
 0.794
C481_06587
Polyamine-transporting ATPase; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
  
 
  0.769
C481_09342
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
  
 
  0.769
C481_00910
SMP-30/gluconolaconase/LRE-like region-containing protein; COG3386 Gluconolactonase.
 
  
 0.751
C481_13959
ROK family protein; COG1940 Transcriptional regulator/sugar kinase.
 
  
 0.702
gap
COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase.
    
 0.692
pgi
COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.686
C481_09023
Type I phosphodiesterase/nucleotide pyrophosphatase; COG1524 Uncharacterized proteins of the AP superfamily.
 
    0.676
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.656
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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