Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_09347Family 1 extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein. (320 aa)    
Predicted Functional Partners:
C481_09332
Binding-protein-dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II; overlaps another CDS with the same product name.
 
 0.998
C481_09337
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I; overlaps another CDS with the same product name.
 
 
 0.991
C481_09342
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
  0.923
C481_19185
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.919
C481_06587
Polyamine-transporting ATPase; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
  0.822
C481_01070
Extracellular solute-binding protein family 1; COG1840 ABC-type Fe3+ transport system, periplasmic component.
     
  0.804
C481_01060
Binding-protein-dependent transport systems inner membrane component; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
  
 
  0.488
C481_01055
ABC transporter-related protein; COG3839 ABC-type sugar transport systems, ATPase components.
    
  0.424
C481_09352
HhH-GPD family protein; COG0177 Predicted EndoIII-related endonuclease.
       0.424
C481_19190
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
  0.424
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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