Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C481_09752COG3612 Uncharacterized protein conserved in archaea. (182 aa)    
Predicted Functional Partners:
C481_09747
Hypothetical protein.
       0.942
C481_09757
Hypothetical protein; COG0328 Ribonuclease HI.
       0.841
C481_17132
COG3390 Uncharacterized protein conserved in archaea.
  
     0.739
C481_18700
COG0681 Signal peptidase I.
  
     0.735
C481_12944
COG3390 Uncharacterized protein conserved in archaea.
  
     0.732
C481_10990
PRC-barrel domain-containing protein.
  
     0.728
C481_17137
Replication factor A; COG1599 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins.
  
     0.725
C481_18635
COG0681 Signal peptidase I.
  
     0.722
C481_12319
COG3388 Uncharacterized protein conserved in archaea.
  
     0.719
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.715
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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