Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
C481_09802COG0464 ATPases of the AAA+ class. (742 aa)    
Predicted Functional Partners:
C481_06921
COG0464 ATPases of the AAA+ class.
     
  0.886
rpl40e
COG1552 Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
    
 0.824
C481_17157
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
 
 
 0.814
C481_19210
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
 
 
 0.814
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
  0.747
C481_18045
Hypothetical protein; COG0457 FOG: TPR repeat.
   
 0.746
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
  
 0.723
C481_05058
COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase).
    
   0.690
C481_07006
Gas vesicle protein GvpN; COG0714 MoxR-like ATPases.
 
     0.680
radA
DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
 
 
 0.666
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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