STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuCCOG0609 ABC-type Fe3+-siderophore transport system, permease component. (365 aa)    
Predicted Functional Partners:
btuD
Corrinoid ABC transporter ATPase; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
 0.998
C481_10345
Periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 0.996
C481_17562
ABC transporter-related protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
 0.993
C481_03917
Hypothetical protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 0.978
C481_01065
Binding-protein-dependent transport systems inner membrane component; COG0555 ABC-type sulfate transport system, permease component.
  
  
 0.511
srp19
Signal recognition particle 19 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
       0.507
C481_05330
Molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; COG0303 Molybdopterin biosynthesis enzyme.
     
 0.506
C481_06592
Binding-protein-dependent transport system inner membrane protein; COG1178 ABC-type Fe3+ transport system, permease component.
  
  
 0.490
C481_04031
Chlorite dismutase.
  
  
 0.488
C481_10355
H/ACA RNA-protein complex component Gar1; COG3277 RNA-binding protein involved in rRNA processing.
       0.447
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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