Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C481_12349Hypothetical protein. (383 aa)    
Predicted Functional Partners:
C481_12354
Hypothetical protein.
     0.987
C481_06362
Adenosylcobinamide amidohydrolase.
  
     0.713
C481_05300
COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
  
  0.704
C481_06127
Hypothetical protein.
  
     0.630
C481_13644
COG0704 Phosphate uptake regulator.
  
     0.630
C481_04051
Hypothetical protein.
  
     0.591
C481_11974
COG2766 Putative Ser protein kinase.
  
     0.588
C481_06067
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.571
C481_09487
COG1422 Predicted membrane protein.
  
     0.559
C481_17317
TrkA-C domain-containing protein.
  
     0.555
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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