STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_12849Cupin 2 conserved barrel domain protein; COG0662 Mannose-6-phosphate isomerase. (124 aa)    
Predicted Functional Partners:
C481_06656
Hypothetical protein.
  
     0.638
C481_06362
Adenosylcobinamide amidohydrolase.
  
     0.576
C481_18325
COG0582 Integrase.
  
     0.528
C481_12844
Putative signal-transducing histidine kinase / response regulator; COG0642 Signal transduction histidine kinase.
 
     0.522
C481_06392
Haloacid dehalogenase; COG1011 Predicted hydrolase (HAD superfamily).
  
     0.519
C481_18460
Nitrogen specific signal transduction histidine kinase NtrB; COG2203 FOG: GAF domain.
  
     0.516
C481_05350
Hypothetical protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
  
     0.508
C481_14503
Integrase family protein; COG0582 Integrase.
  
     0.507
C481_12349
Hypothetical protein.
  
     0.483
C481_05295
COG1522 Transcriptional regulators.
  
     0.473
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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