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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
C481_12909Branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein 1; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component. (407 aa)    
Predicted Functional Partners:
C481_12919
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.968
C481_12924
Inner-membrane translocator; COG4177 ABC-type branched-chain amino acid transport system, permease component; overlaps another CDS with the same product name.
 
 
 0.968
C481_12929
Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components; overlaps another CDS with the same product name.
 
 
 0.957
C481_12914
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.915
C481_07396
Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.832
C481_02732
Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.797
C481_02167
Urea ABC transporter permease UrtB; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.785
C481_02172
Inner-membrane translocator; COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.782
C481_02737
COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.778
C481_02752
ABC transporter-like protein; COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.775
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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