STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_12909Branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein 1; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component. (407 aa)    
Predicted Functional Partners:
C481_12924
Inner-membrane translocator; COG4177 ABC-type branched-chain amino acid transport system, permease component; overlaps another CDS with the same product name.
 
 
 0.955
C481_12919
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.948
C481_12929
Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components; overlaps another CDS with the same product name.
 
 
 0.940
C481_07396
Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.870
C481_12914
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.867
C481_02732
Inner-membrane translocator; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.832
C481_02167
Urea ABC transporter permease UrtB; COG0559 Branched-chain amino acid ABC-type transport system, permease components.
 
 
 0.823
C481_02172
Inner-membrane translocator; COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.818
C481_02737
COG4177 ABC-type branched-chain amino acid transport system, permease component.
 
 
 0.815
C481_07401
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.763
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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