Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C481_04526 | C481_13914 | C481_04526 | C481_13914 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | 0.917 |
C481_04526 | C481_19876 | C481_04526 | C481_19876 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | ATP-dependent exonuclase v subunit beta; COG0210 Superfamily I DNA and RNA helicases. | 0.925 |
C481_04526 | ligA | C481_04526 | C481_17672 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.759 |
C481_04526 | mutL | C481_04526 | C481_04993 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.819 |
C481_04526 | pcn | C481_04526 | C481_17865 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.804 |
C481_04526 | uvrB | C481_04526 | C481_17732 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.855 |
C481_04526 | uvrC | C481_04526 | C481_17702 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.933 |
C481_13904 | C481_13909 | C481_13904 | C481_13909 | Hypothetical protein. | Hypothetical protein. | 0.777 |
C481_13904 | C481_13914 | C481_13904 | C481_13914 | Hypothetical protein. | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | 0.873 |
C481_13904 | C481_19876 | C481_13904 | C481_19876 | Hypothetical protein. | ATP-dependent exonuclase v subunit beta; COG0210 Superfamily I DNA and RNA helicases. | 0.462 |
C481_13904 | ligA | C481_13904 | C481_17672 | Hypothetical protein. | NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.666 |
C481_13904 | mutL | C481_13904 | C481_04993 | Hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.776 |
C481_13904 | pcn | C481_13904 | C481_17865 | Hypothetical protein. | DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.804 |
C481_13904 | uvrB | C481_13904 | C481_17732 | Hypothetical protein. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.805 |
C481_13904 | uvrC | C481_13904 | C481_17702 | Hypothetical protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.794 |
C481_13909 | C481_13904 | C481_13909 | C481_13904 | Hypothetical protein. | Hypothetical protein. | 0.777 |
C481_13909 | C481_13914 | C481_13909 | C481_13914 | Hypothetical protein. | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | 0.774 |
C481_13914 | C481_04526 | C481_13914 | C481_04526 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | 0.917 |
C481_13914 | C481_13904 | C481_13914 | C481_13904 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | Hypothetical protein. | 0.873 |
C481_13914 | C481_13909 | C481_13914 | C481_13909 | UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases. | Hypothetical protein. | 0.774 |
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