STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_15435COG3413 Predicted DNA binding protein. (227 aa)    
Predicted Functional Partners:
C481_03217
Hypothetical protein; COG1266 Predicted metal-dependent membrane protease.
  
     0.691
C481_20106
Hypothetical protein; COG0730 Predicted permeases.
  
     0.675
C481_09942
Hypothetical protein.
  
     0.596
C481_16512
Abortive infection protein; COG2264 Ribosomal protein L11 methylase.
  
     0.569
C481_01225
Bacterio-opsin activator-like protein; COG3413 Predicted DNA binding protein.
  
     0.555
C481_02972
SpoVT/AbrB domain protein; COG0704 Phosphate uptake regulator.
  
     0.513
C481_03167
Hypothetical protein.
  
     0.487
C481_01110
Nuclease-like protein; COG1525 Micrococcal nuclease (thermonuclease) homologs.
  
     0.477
C481_02107
COG1309 Transcriptional regulator.
  
     0.473
C481_17727
Hypothetical protein.
  
     0.447
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.