STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_16517COG0350 Methylated DNA-protein cysteine methyltransferase. (156 aa)    
Predicted Functional Partners:
C481_17920
Helicase c2; COG1199 Rad3-related DNA helicases.
 
   
 0.692
C481_08511
Hypothetical protein.
  
     0.658
C481_15740
N-acetyltransferase GCN5; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.639
C481_06836
COG1711 Uncharacterized protein conserved in archaea.
  
     0.637
trpC
COG0134 Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
       0.634
trpA
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.634
C481_18950
Nitrogen-fixing NifU domain-containing protein; COG0694 Thioredoxin-like proteins and domains.
  
     0.609
C481_04526
UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases.
  
   
 0.608
C481_07941
Hypothetical protein; COG1573 Uracil-DNA glycosylase.
 
     0.605
trpB-2
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.590
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.