STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_18310Hypothetical protein. (149 aa)    
Predicted Functional Partners:
C481_12704
Type II secretion system protein F; COG2064 Flp pilus assembly protein TadC.
  
   
 0.740
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.735
C481_04756
Zinc finger SWIM domain-containing protein; COG5431 Uncharacterized metal-binding protein.
  
     0.732
C481_13944
COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase.
  
     0.713
C481_07656
Hypothetical protein; COG4801 Predicted acyltransferase.
  
     0.712
C481_18700
COG0681 Signal peptidase I.
  
     0.704
C481_18615
COG3365 Uncharacterized protein conserved in archaea.
  
     0.692
C481_15560
PRC-barrel domain-containing protein.
  
     0.689
C481_14893
Exosortase EpsH-like protein; COG4083 Predicted membrane protein.
  
     0.686
C481_09307
COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation.
  
     0.684
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.