STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C481_18980uroporphyrin-III C-methyltransferase; COG0007 Uroporphyrinogen-III methylase. (277 aa)    
Predicted Functional Partners:
C481_18985
COG0181 Porphobilinogen deaminase.
 
 0.999
C481_05300
COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
 
 0.996
hemD
COG1587 Uroporphyrinogen-III synthase.
 
 
 0.979
C481_19010
COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.964
C481_12354
Hypothetical protein.
  
 
 0.944
C481_08551
COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes.
 
  
 0.929
C481_02367
COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
  
 0.901
C481_03537
COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
  
 0.900
C481_17830
Nitrite and sulfite reductase 4Fe-4S region; COG0155 Sulfite reductase, beta subunit (hemoprotein).
 
  
 0.898
C481_01185
COG2073 Cobalamin biosynthesis protein CbiG.
 
  
 0.875
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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