Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C481_18985COG0181 Porphobilinogen deaminase. (378 aa)    
Predicted Functional Partners:
hemD
COG1587 Uroporphyrinogen-III synthase.
 
 0.999
C481_18980
uroporphyrin-III C-methyltransferase; COG0007 Uroporphyrinogen-III methylase.
 
 0.999
C481_19010
COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 0.999
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
 0.979
C481_04031
Chlorite dismutase.
 
   
 0.928
hemL
COG0001 Glutamate-1-semialdehyde aminotransferase.
 
  
 0.922
C481_19205
Class III aminotransferase; COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.883
C481_19480
Class III aminotransferase; COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.879
C481_05300
COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
 
 
 0.840
C481_18970
Phosphoesterase RecJ domain-containing protein; COG0608 Single-stranded DNA-specific exonuclease.
       0.769
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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