Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C481_19035COG1378 Predicted transcriptional regulators. (268 aa)    
Predicted Functional Partners:
C481_04898
COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes.
   
    0.630
C481_19040
4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
     0.608
C481_19030
Hypothetical protein.
       0.574
C481_17777
(2R)-phospho-3-sulfolactate synthase ComA.
   
    0.535
C481_19025
COG0477 Permeases of the major facilitator superfamily.
 
     0.511
C481_02402
COG1378 Predicted transcriptional regulators.
  
   
 0.483
C481_07096
COG1491 Predicted RNA-binding protein.
  
     0.458
C481_07611
4Fe-4S ferredoxin; COG0437 Fe-S-cluster-containing hydrogenase components 1.
   
    0.415
C481_10660
4Fe-4S ferredoxin; COG0437 Fe-S-cluster-containing hydrogenase components 1.
   
    0.415
C481_14758
4Fe-4S ferredoxin; COG0437 Fe-S-cluster-containing hydrogenase components 1.
   
    0.415
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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