Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C481_19680Hypothetical protein. (797 aa)    
Predicted Functional Partners:
C481_19675
Hypothetical protein.
       0.814
C481_19665
Hypothetical protein.
       0.806
C481_19670
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
       0.786
C481_19685
Hypothetical protein.
       0.773
C481_11625
COG3413 Predicted DNA binding protein.
  
     0.712
C481_10420
Mur ligase family CapB protein; COG0769 UDP-N-acetylmuramyl tripeptide synthase.
  
     0.679
C481_11275
Hypothetical protein.
  
     0.679
C481_05170
COG4689 Acetoacetate decarboxylase.
  
     0.629
C481_07481
Ethyl tert-butyl ether degradation EthD.
  
     0.623
C481_14748
Hypothetical protein.
  
     0.616
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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