Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C481_20141Hypothetical protein. (87 aa)    
Predicted Functional Partners:
C481_20146
COG0640 Predicted transcriptional regulators.
       0.802
C481_20151
Response regulator receiver; COG0784 FOG: CheY-like receiver.
       0.528
C481_20126
COG0785 Cytochrome c biogenesis protein.
       0.510
C481_20131
Redoxin domain-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.510
C481_20136
Electron transport protein SCO1/SenC; COG0191 Fructose/tagatose bisphosphate aldolase.
       0.510
C481_20156
Hypothetical protein.
       0.439
C481_20161
Hypothetical protein.
       0.439
C481_20121
TrkA-C domain protein; COG0569 K+ transport systems, NAD-binding component.
       0.409
Your Current Organism:
Natrialba asiatica
NCBI taxonomy Id: 29540
Other names: N. asiatica DSM 12278, Natrialba asiatica 172P1, Natrialba asiatica DSM 12278, halophilic archaebacterium 172P1, halophilic archaeon 172P1, halophilic bacteria (strain 172P1), halophilic bacteria strain 172P1, halophilic bacterium (strain 172P1)
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