Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C481_06651 | C481_20816 | C481_06651 | C481_20816 | Short-chain dehydrogenase/reductase SDR; COG0300 Short-chain dehydrogenases of various substrate specificities. | Thioesterase; COG0824 Predicted thioesterase. | 0.486 |
C481_12964 | C481_20816 | C481_12964 | C481_20816 | COG2070 Dioxygenases related to 2-nitropropane dioxygenase. | Thioesterase; COG0824 Predicted thioesterase. | 0.557 |
C481_13714 | C481_20816 | C481_13714 | C481_20816 | Hypothetical protein. | Thioesterase; COG0824 Predicted thioesterase. | 0.502 |
C481_20811 | C481_20816 | C481_20811 | C481_20816 | COG0589 Universal stress protein UspA and related nucleotide-binding proteins. | Thioesterase; COG0824 Predicted thioesterase. | 0.400 |
C481_20816 | C481_06651 | C481_20816 | C481_06651 | Thioesterase; COG0824 Predicted thioesterase. | Short-chain dehydrogenase/reductase SDR; COG0300 Short-chain dehydrogenases of various substrate specificities. | 0.486 |
C481_20816 | C481_12964 | C481_20816 | C481_12964 | Thioesterase; COG0824 Predicted thioesterase. | COG2070 Dioxygenases related to 2-nitropropane dioxygenase. | 0.557 |
C481_20816 | C481_13714 | C481_20816 | C481_13714 | Thioesterase; COG0824 Predicted thioesterase. | Hypothetical protein. | 0.502 |
C481_20816 | C481_20811 | C481_20816 | C481_20811 | Thioesterase; COG0824 Predicted thioesterase. | COG0589 Universal stress protein UspA and related nucleotide-binding proteins. | 0.400 |
C481_20816 | menB | C481_20816 | C481_10585 | Thioesterase; COG0824 Predicted thioesterase. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.475 |
menB | C481_20816 | C481_10585 | C481_20816 | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | Thioesterase; COG0824 Predicted thioesterase. | 0.475 |