STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF1535Hypothetical protein; Similar to pir:S33518 [Acholeplasma laidlawii], percent identity 29 in 116 aa, BLASTP E(): 3e-08. (133 aa)    
Predicted Functional Partners:
BF1534
Glucose-1-phosphate cytidylyltransferase; Similar to gp:AP005956_244 [Bradyrhizobium japonicum USDA 110], percent identity 60 in 258 aa, BLASTP E(): 2e-87.
       0.797
BF1536
CDP-glucose-4,6-dehydratase; Similar to gp:AE017009_148 [Bacillus cereus ATCC 14579], percent identity 53 in 359 aa, BLASTP E(): e-108.
       0.797
BF1537
Putative dTDP-glucose 4,6-dehydratase; Similar to gp:AF479753_2 [Lactobacillus gasseri], percent identity 33 in 127 aa, BLASTP E(): 1e-07.
       0.773
BF1107
Putative epimerase; Similar ro gp: AF125164_16 [Bacteroides fragilis 638R], percent identity 100 in 383 aa, BLASTP E(): 0.0.
  
     0.767
BF1541
Putative succinyltransferase; Similar to gp:AE016937_209 [Bacteroides thetaiotaomicron VPI-5482], percent identity 24 in 410 aa, BLASTP E(): 4e-30.
       0.750
BF1538
Conserved hypothetical protein; Similar to gp:AF025396_11 [Listonella anguillarum], percent identity 25 in 225 aa, BLASTP E(): 3e-08.
       0.741
BF1539
2,5-diketo-D-gluconic acid reductase; Similar to gp:AE017011_149 [Bacillus cereus ATCC 14579], percent identity 40 in 293 aa, BLASTP E(): 7e-47.
       0.741
BF1540
Hypothetical protein.
       0.741
BF1844.1
Putative epimerase; Similar to gp:AF285774_25 [Bacteroides fragilis NCTC9343], percent identity 100 in 376 aa, BLASTP E(): 0.0; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
     0.706
BF2569.1
Putative epimerase; Similar to gp:AF285774_25 [Bacteroides fragilis NCTC9343], percent identity 100 in 376 aa, BLASTP E(): 0.0.
 
     0.706
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.