STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF4515Peptidylprolyl isomerase; Similar to gp:AE016938_81 [Bacteroides thetaiotaomicron VPI-5482], percent identity 70 in 289 aa, BLASTP E(): e-110. (287 aa)    
Predicted Functional Partners:
BF4514
FKBP-type peptidyl-prolyl cis-trans isomerase; Similar to gp:AE016938_80 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 194 aa, BLASTP E(): e-100.
 
    
0.847
BF4516
Transcriptional regulator; Similar to gp:AE016938_82 [Bacteroides thetaiotaomicron VPI-5482], percent identity 95 in 154 aa, BLASTP E(): 3e-79.
       0.693
BF4517
Putative membrane protein; Similar to gp:AE016938_83 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 103 aa, BLASTP E(): 2e-52.
       0.686
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.581
cobB
Putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase; Similar to gp:AE016938_79 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 231 aa, BLASTP E(): e-113; Belongs to the sirtuin family. Class III subfamily.
       0.483
BF4113
Cyclophilin-type peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.423
BF2744
Serine protease precursor; Similar to gp:AE016931_103 [Bacteroides thetaiotaomicron VPI-5482], percent identity 81 in 516 aa, BLASTP E(): 0.0.
  
 
 0.415
BF0237
Heat shock protein HtpG; Similar to gp:AE011304_10 [Leptospira interrogans serovar lai str. 56601], percent identity 35 in 599 aa, BLASTP E(): e-105.
   
 0.410
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.410
BF1862
SOS mutagenesis and repair protein UmuC homolog; Similar to gpu:AE017176_168 [Porphyromonas gingivalis W83], percent identity 43 in 416 aa, BLASTP E(): 1e-98.
  
 
 
 0.401
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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